1dd4 -- Ligsite

Prediction Images

Residue Predictions

Pocket Predictions

• Visualize predictions using Jmol.

• Download PyMol visualization script: 1dd4_ligsite_search_blur.pml.
  (Requires residue PDB file and pocket DX file)

Score Files

• Pocket grid scores:
  PDB format
  DX format

• Residue scores:
  Chain A
  Chain B
  Chain C
  Chain D
  Chain E
  Chain F
  Chain G
  Chain H
  PDB (score in TempFactor field)
  

• Conservation scores:
  (calculated using Jensen-Shannon divergence on HSSP alignments)
  Chain A
  Chain B
  Chain C
  Chain D
  Chain E
  Chain F
  Chain G
  Chain H
  

Back to Ligsite structure list.