Protein Specificity Determining Position (SDP) Predictions and Data
![Example Alignment](group_sim_thumb.png)
Please cite the paper if you use any of resources below.Capra JA and Singh M. Characterization and Prediction of Residues Determining Protein Functional Specificity. Bioinformatics, 24(13): 1473-1480, 2008. [Paper]
- GroupSim Source code - group_sim_sdp.tar.gz (14K)
This archive contains python code for the GroupSim+ConsWin method.
The program accepts FASTA and CLUSTAL alignments as input. The README and comments in group_sim_sdp.py provide details and usage examples. The program is free and licensed under the GNU General Public License (GPL); see the official GNU website for more information. - Data - capra_bioinf08_data.tar.gz (2.2MB)
This archive contains the alignments and putative SDP assignments used in the paper.