Protein Specificity Determining Position (SDP) Predictions and Data
Please cite the paper if you use any of resources below.
Capra JA and Singh M. Characterization and Prediction of Residues Determining Protein Functional Specificity. Bioinformatics, 24(13): 1473-1480, 2008. [Paper]
- GroupSim Source code - group_sim_sdp.tar.gz (14K)
This archive contains python code for the GroupSim+ConsWin method.
The program accepts FASTA and CLUSTAL alignments as input. The README and comments in group_sim_sdp.py provide details and usage examples. The program is free and licensed under the GNU General Public License (GPL); see the official GNU website for more information.
- Data - capra_bioinf08_data.tar.gz (2.2MB)
This archive contains the alignments and putative SDP assignments used in the paper.