Specificity Determining Position (SDP) Data Sets and Predictions

This webpage provides source code and data supporting the paper:

Capra JA and Singh M. Characterization and Prediction of Residues Determining Protein Functional Specificity. Bioinformatics, 24(13): 1473-1480, 2008. [Paper]

• Web form - Coming Soon
  Identify likely SDPs in alignments using GroupSim and ConsWin as described in the paper.
• Source code - group_sim_sdp.tar.gz (14K) - updated 09/11/09
  This archive contains python code for the GroupSim+ConsWin method.
  The program accepts FASTA and CLUSTAL alignments as input. The README and comments in group_sim_sdp.py provide details and usage examples. The program is free and licensed under the GNU General Public License (GPL); see the official GNU website for more information.
• Data - capra_bioinf08_data.tar.gz (2.2MB)
  This archive contains the alignments and putative SDP assignments used in the paper.