GroupSim

Protein Specificity Determining Position (SDP) Predictions and Data

This webpage provides source code for GroupSim+ConsWin and data supporting the paper:

Capra JA and Singh M. Characterization and Prediction of Residues Determining Protein Functional Specificity. Bioinformatics, 24(13): 1473-1480, 2008. [Paper]

Please cite the paper if you use any of resources below.

• GroupSim Source code - group_sim_sdp.tar.gz (14K)
  This archive contains python code for the GroupSim+ConsWin method.
  The program accepts FASTA and CLUSTAL alignments as input. The README and comments in group_sim_sdp.py provide details and usage examples. The program is free and licensed under the GNU General Public License (GPL); see the official GNU website for more information.
• Data - capra_bioinf08_data.tar.gz (2.2MB)
  This archive contains the alignments and putative SDP assignments used in the paper.