The Ampl model and scripts that can be used solve the integer and linear programming formulation of the SCP problem (tar'ed and gzipped): cks_lp_scp.v1.tar.gz
This software is covered by the GNU General Public License version 2. See LICENSE file.
The Ampl and script files contain usage information in the comments. See this page for some instructions on how to use these files. The Ampl code has been tested on Ampl version 20010215 on SunOS 5.7 and is known to parse with Ampl Student Version 20040229 on Linux.
If you use the above code, please cite
C. L. Kingsford, B. Chazelle, M. Singh. Solving and analyzing side-chain positioning problems using linear and integer programming. Bioinformatics (2005) 21: 1028–1036.
visitors since July 27, 2004.
Last modified November 17, 2004.
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