# ligasite_hssp/1JCG_A_hssp.clustal -- js_divergence - window_size: 0 - window lambda: 0.50 - background: blosum62 - seq. weighting: True - gap penalty: 1 - normalized: False
# reference sequence: first
# align_column_number	amino acid	score	occupancy
0	M	0.265584	530/1010
1	L	0.302454	825/1010
2	R	0.317503	835/1010
3	K	0.252400	851/1010
4	D	0.333719	870/1010
5	I	0.465871	885/1010
6	G	0.519629	886/1010
7	I	0.628014	889/1010
8	D	0.796487	899/1010
9	L	0.634560	915/1010
10	G	0.748246	932/1010
11	T	0.716507	941/1010
12	A	0.519699	944/1010
13	N	0.616443	947/1010
14	T	0.536669	949/1010
15	L	0.397252	953/1010
16	V	0.571221	955/1010
17	F	0.462688	933/1010
18	L	0.303593	955/1010
19	R	0.277518	955/1010
20	G	0.361830	955/1010
21	K	0.347107	954/1010
22	G	0.541165	946/1010
23	I	0.376069	954/1010
24	V	0.507639	955/1010
25	V	0.360943	954/1010
26	N	0.352130	955/1010
27	E	0.571041	960/1010
28	P	0.745227	961/1010
29	S	0.674526	961/1010
30	V	0.548030	962/1010
31	I	0.616481	962/1010
32	A	0.612675	962/1010
33	I	0.374239	962/1010
34	D	0.303364	953/1010
35	S	0.190519	958/1010
36	T	0.166578	957/1010
37	T	0.236268	967/1010
38	G	0.317449	943/1010
39	E	0.232002	944/1010
40	I	0.334963	944/1010
41	L	0.246868	962/1010
42	K	0.477325	962/1010
43	V	0.506159	970/1010
44	G	0.683744	971/1010
45	L	0.205278	970/1010
46	E	0.350491	971/1010
47	A	0.707454	973/1010
48	K	0.447082	973/1010
49	N	0.270555	973/1010
50	M	0.596299	976/1010
51	I	0.305194	976/1010
52	G	0.438454	976/1010
53	K	0.555372	976/1010
54	T	0.440882	976/1010
55	P	0.643349	976/1010
56	A	0.261769	975/1010
57	T	0.356710	976/1010
58	I	0.607754	976/1010
59	K	0.159952	966/1010
60	A	0.430113	966/1010
61	I	0.448460	975/1010
62	R	0.545205	975/1010
63	P	0.673508	965/1010
64	M	0.520968	965/1010
65	R	0.400300	957/1010
66	D	0.388111	957/1010
67	G	0.599578	957/1010
68	V	0.515162	976/1010
69	I	0.532019	976/1010
70	A	0.436859	976/1010
71	D	0.659119	976/1010
72	Y	0.459081	976/1010
73	T	0.284332	976/1010
74	V	0.286830	976/1010
75	A	0.396008	976/1010
76	L	0.362793	976/1010
77	V	0.189695	976/1010
78	M	0.580866	976/1010
79	L	0.594054	976/1010
80	R	0.408320	976/1010
81	Y	0.316514	976/1010
82	F	0.521520	976/1010
83	I	0.454600	976/1010
84	N	0.266083	976/1010
85	K	0.334323	976/1010
86	A	0.288776	976/1010
87	K	0.159488	976/1010
88	G	0.115855	976/1010
89	G	0.251210	965/1010
90	M	0.157662	921/1010
91	N	0.164218	963/1010
92	L	0.202149	969/1010
93	F	0.121362	972/1010
94	K	0.264856	976/1010
95	P	0.422740	976/1010
96	R	0.344795	976/1010
97	V	0.442242	976/1010
98	V	0.398605	976/1010
99	I	0.561052	976/1010
100	G	0.566681	976/1010
101	V	0.531989	976/1010
102	P	0.821794	976/1010
103	I	0.364813	976/1010
104	G	0.440552	976/1010
105	I	0.373336	976/1010
106	T	0.682789	976/1010
107	D	0.360726	976/1010
108	V	0.504319	976/1010
109	E	0.691958	976/1010
110	R	0.575037	976/1010
111	R	0.570016	976/1010
112	A	0.700916	975/1010
113	I	0.440451	975/1010
114	L	0.308001	975/1010
115	D	0.571300	986/1010
116	A	0.480727	986/1010
117	G	0.425848	986/1010
118	L	0.185486	988/1010
119	E	0.153119	967/1010
120	A	0.521575	992/1010
121	G	0.673115	992/1010
122	A	0.501928	992/1010
123	S	0.382693	992/1010
124	K	0.308347	995/1010
125	V	0.446013	995/1010
126	F	0.288811	995/1010
127	L	0.519582	995/1010
128	I	0.589916	996/1010
129	E	0.400512	996/1010
130	E	0.654052	995/1010
131	P	0.657254	995/1010
132	M	0.436976	995/1010
133	A	0.666780	998/1010
134	A	0.661563	998/1010
135	A	0.730086	998/1010
136	I	0.575437	998/1010
137	G	0.666457	998/1010
138	S	0.442631	998/1010
139	N	0.605772	998/1010
140	L	0.526482	998/1010
141	N	0.588909	998/1010
142	V	0.488337	998/1010
143	E	0.173593	998/1010
144	E	0.410545	998/1010
145	P	0.447422	997/1010
146	S	0.159097	998/1010
147	G	0.521524	998/1010
148	N	0.402641	998/1010
149	M	0.662658	998/1010
150	V	0.681104	998/1010
151	V	0.528640	998/1010
152	D	0.727651	998/1010
153	I	0.599314	998/1010
154	G	0.788514	1006/1010
155	G	0.640698	1006/1010
156	G	0.668128	1006/1010
157	T	0.646595	1006/1010
158	T	0.619538	1006/1010
159	E	0.679298	1006/1010
160	V	0.576952	1006/1010
161	A	0.591850	1006/1010
162	V	0.588665	1006/1010
163	I	0.572329	1006/1010
164	S	0.534188	1006/1010
165	L	0.496181	1006/1010
166	G	0.521263	1006/1010
167	S	0.522115	1006/1010
168	I	0.398745	1006/1010
169	V	0.540089	1006/1010
170	T	0.237262	1006/1010
171	W	0.295131	1005/1010
172	E	0.274710	1006/1010
173	S	0.467521	1005/1010
174	I	0.408742	1005/1010
175	R	0.586088	1005/1010
176	I	0.459080	1005/1010
177	A	0.642114	1005/1010
178	G	0.761794	1005/1010
179	D	0.588882	1005/1010
180	E	0.279870	1004/1010
181	M	0.551020	1004/1010
182	D	0.679862	1003/1010
183	E	0.364192	1003/1010
184	A	0.346076	1003/1010
185	I	0.694929	1003/1010
186	V	0.375925	1003/1010
187	Q	0.283845	1003/1010
188	Y	0.526477	1003/1010
189	V	0.489488	1003/1010
190	R	0.447218	1002/1010
191	E	0.302026	1002/1010
192	T	0.299975	1002/1010
193	Y	0.599967	1002/1010
194	R	0.451943	1000/1010
195	V	0.323101	999/1010
196	A	0.222512	999/1010
197	I	0.480829	999/1010
198	G	0.641377	999/1010
199	E	0.386756	994/1010
200	R	0.262243	994/1010
201	T	0.530996	994/1010
202	A	0.656666	994/1010
203	E	0.694703	994/1010
204	R	0.223795	994/1010
205	V	0.497864	994/1010
206	K	0.743865	994/1010
207	I	0.388447	994/1010
208	E	0.320660	994/1010
209	I	0.468417	994/1010
210	G	0.566635	993/1010
211	N	0.302749	992/1010
212	V	0.404734	992/1010
213	F	0.149556	984/1010
214	P	0.166327	954/1010
215	S	0.116630	930/1010
216	K	0.125369	950/1010
217	E	0.177126	964/1010
218	N	0.084989	819/1010
219	D	0.102894	831/1010
220	E	0.151519	969/1010
221	L	0.144585	969/1010
222	E	0.243750	977/1010
223	T	0.166119	476/1010
224	T	0.099671	483/1010
225	V	0.459169	989/1010
226	S	0.242780	989/1010
227	G	0.528861	989/1010
228	I	0.380339	993/1010
229	D	0.455488	993/1010
230	L	0.297232	993/1010
231	S	0.211934	987/1010
232	T	0.312132	992/1010
233	G	0.533044	993/1010
234	L	0.286033	993/1010
235	P	0.599873	994/1010
236	R	0.309334	994/1010
237	K	0.229859	993/1010
238	L	0.241624	992/1010
239	T	0.205625	992/1010
240	L	0.517722	989/1010
241	K	0.341093	988/1010
242	G	0.231191	988/1010
243	G	0.144265	988/1010
244	E	0.345494	991/1010
245	V	0.427711	992/1010
246	R	0.229556	991/1010
247	E	0.330947	994/1010
248	A	0.377903	994/1010
249	L	0.435920	994/1010
250	R	0.194851	994/1010
251	S	0.293265	994/1010
252	V	0.287005	994/1010
253	V	0.413346	994/1010
254	V	0.167724	992/1010
255	A	0.186069	993/1010
256	I	0.546527	995/1010
257	V	0.327736	995/1010
258	E	0.246935	995/1010
259	S	0.309038	995/1010
260	V	0.459022	993/1010
261	R	0.360530	990/1010
262	T	0.114178	989/1010
263	T	0.321094	991/1010
264	L	0.535070	992/1010
265	E	0.522718	992/1010
266	K	0.216966	986/1010
267	T	0.434590	987/1010
268	P	0.542135	988/1010
269	P	0.575284	991/1010
270	E	0.537265	991/1010
271	L	0.480099	991/1010
272	V	0.310407	988/1010
273	S	0.279522	989/1010
274	D	0.588313	989/1010
275	I	0.522180	989/1010
276	I	0.235099	963/1010
277	E	0.390432	962/1010
278	R	0.375920	963/1010
279	G	0.577943	965/1010
280	I	0.523027	968/1010
281	F	0.362756	966/1010
282	L	0.605148	983/1010
283	T	0.476891	982/1010
284	G	0.772538	983/1010
285	G	0.751834	983/1010
286	G	0.516115	983/1010
287	S	0.533706	982/1010
288	L	0.505424	980/1010
289	L	0.506280	975/1010
290	R	0.362280	975/1010
291	G	0.386145	975/1010
292	L	0.471871	975/1010
293	D	0.393973	975/1010
294	T	0.260169	972/1010
295	L	0.342320	972/1010
296	L	0.507195	971/1010
297	Q	0.246105	971/1010
298	K	0.360801	971/1010
299	E	0.246496	971/1010
300	T	0.480373	971/1010
301	G	0.402167	971/1010
302	I	0.428685	971/1010
303	S	0.364800	971/1010
304	V	0.461983	971/1010
305	I	0.175660	969/1010
306	R	0.354689	969/1010
307	S	0.425538	969/1010
308	E	0.383076	968/1010
309	E	0.455583	967/1010
310	P	0.726216	967/1010
311	L	0.379278	966/1010
312	T	0.234678	963/1010
313	A	0.524792	957/1010
314	V	0.646917	957/1010
315	A	0.542766	954/1010
316	K	0.277822	929/1010
317	G	0.748373	901/1010
318	A	0.401593	886/1010
319	G	0.459188	884/1010
320	M	0.271635	884/1010
321	V	0.261481	847/1010
322	L	0.416622	847/1010
323	D	0.273702	844/1010
324	K	0.177109	835/1010
325	V	0.193509	817/1010
326	N	0.204944	812/1010
327	I	0.110158	741/1010
328	L	0.220281	594/1010
329	K	0.162024	560/1010
330	K	0.103339	513/1010
331	L	0.157367	395/1010
332	Q	0.053192	70/1010
333	G	0.021543	19/1010
334	A	0.000000	0/0